STRINGSTRING
Bra000622 protein (Brassica rapa) - STRING interaction network
"Bra000622" - AT5G60160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000622AT5G60160 (E=6e-266) | aspartyl aminopeptidase, putative (478 aa)    
Predicted Functional Partners:
Bra034547
AT4G33090 (E=0.0) APM1, ATAPM1 | APM1 (AMINOPEPTIDASE M1); aminopeptidase (871 aa)
     
   
  0.489
Bra019433
AT1G63770 (E=0.0) | peptidase M1 family protein (888 aa)
     
   
  0.489
Bra018715
AT1G63770 (E=0.0) | peptidase M1 family protein (954 aa)
     
   
  0.489
Bra011412
AT4G33090 (E=0.0) APM1, ATAPM1 | APM1 (AMINOPEPTIDASE M1); aminopeptidase (873 aa)
     
   
  0.489
Bra029930
AT3G01920 (E=5e-143) | yrdC family protein (264 aa)
              0.437
Bra018018
AT3G01920 (E=8e-015) | yrdC family protein (121 aa)
              0.437
Bra012011
AT2G27490 (E=3e-113) ATCOAE | ATCOAE; ATP binding / dephospho-CoA kinase (232 aa)
              0.437
Bra006654
AT5G60590 (E=9e-052) | yrdC protein-related (132 aa)
              0.437
Bra002469
AT5G60590 (E=4e-140) | yrdC protein-related (282 aa)
              0.437
Bra000509
AT2G27490 (E=8e-114) ATCOAE | ATCOAE; ATP binding / dephospho-CoA kinase (229 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]