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Bra000625 protein (Brassica rapa) - STRING interaction network
"Bra000625" - AT5G50375 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000625AT5G50375 (E=9e-145) CPI1 | CPI1 (CYCLOPROPYL ISOMERASE); cycloeucalenol cycloisomerase (278 aa)    
Predicted Functional Partners:
Bra019839
AT1G11680 (E=5e-271) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (488 aa)
     
 
  0.941
Bra033117
AT4G12110 (E=1e-169) SMO1-1, ATSMO1, ATSMO1-1 | SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (298 aa)
     
 
    0.898
Bra013643
AT4G22756 (E=4e-157) SMO1-2, ATSMO1, ATSMO1-2, SMO1 | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (444 aa)
     
 
    0.898
Bra021490
AT1G11680 (E=4e-255) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (490 aa)
     
 
  0.693
Bra016822
AT1G11680 (E=2e-126) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (286 aa)
     
 
  0.693
Bra016820
AT1G11680 (E=8e-128) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (231 aa)
     
 
  0.693
Bra039180
AT3G02580 (E=2e-155) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (276 aa)
     
 
  0.568
Bra021429
AT3G02580 (E=9e-156) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (282 aa)
     
 
  0.568
Bra001053
AT3G02580 (E=9e-151) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (282 aa)
     
 
  0.568
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
     
 
  0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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