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Bra000634 protein (Brassica rapa) - STRING interaction network
"Bra000634" - AT4G07410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000634AT4G07410 (E=0.0) | transducin family protein / WD-40 repeat family protein (801 aa)    
Predicted Functional Partners:
Bra010382
AT4G28200 (E=2e-270) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- RNA processing; LOCATED IN- intracellular; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA-processing protein, HAT helix (InterPro-IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 352 Blast hits to 342 proteins in 144 species- Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 130; Plants - 24; Viruses - 0; Other Eukaryotes - 87 (source- NCBI BLink). (646 aa)
     
  0.999
Bra023316
AT5G11240 (E=3e-276) | transducin family protein / WD-40 repeat family protein (622 aa)
     
  0.999
Bra008979
AT5G11240 (E=8e-298) | transducin family protein / WD-40 repeat family protein (616 aa)
     
  0.999
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
  0.999
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
  0.999
Bra005881
AT2G47990 (E=4e-225) SWA1, EDA13, EDA19 | SWA1 (SLOW WALKER1); nucleotide binding (533 aa)
     
  0.999
Bra029327
AT5G11240 (E=4e-027) | transducin family protein / WD-40 repeat family protein (169 aa)
     
  0.999
Bra026762
AT1G15420 (E=1e-037) | unknown protein (353 aa)
     
  0.999
Bra026131
AT1G15420 (E=8e-085) | unknown protein (279 aa)
     
  0.999
Bra016659
AT1G15420 (E=1e-058) | unknown protein (268 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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