STRINGSTRING
Bra000638 protein (Brassica rapa) - STRING interaction network
"Bra000638" - AT4G08150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000638AT4G08150 (E=9e-163) KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (387 aa)    
Predicted Functional Partners:
Bra013076
AT2G16400 (E=5e-164) BLH7 | BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (450 aa)
       
   
0.900
Bra013075
AT2G16400 (E=7e-162) BLH7 | BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (426 aa)
       
   
0.900
Bra001976
AT2G16400 (E=7e-165) BLH7 | BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (444 aa)
       
      0.900
Bra000409
AT2G46020 (E=0.0) CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative (2162 aa)
       
 
  0.882
Bra033698
AT5G43810 (E=0.0) ZLL, PNH, AGO10 | ZLL (ZWILLE); translation initiation factor (974 aa)
       
 
  0.702
Bra025497
AT5G41410 (E=2e-224) BEL1 | BEL1 (BELL 1); DNA binding / protein binding / transcription factor (593 aa)
       
 
0.684
Bra028883
AT5G02030 (E=1e-229) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (584 aa)
       
 
0.683
Bra009618
AT5G02030 (E=9e-240) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (586 aa)
       
 
0.683
Bra005703
AT5G02030 (E=6e-206) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (570 aa)
       
 
0.679
Bra037031
AT4G32980 (E=8e-102) ATH1 | ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); DNA binding / sequence-specific DNA binding / transcription factor (437 aa)
       
 
0.663
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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