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Bra000641 protein (Brassica rapa) - STRING interaction network
"Bra000641" - AT2G34210 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
Bra000641AT2G34210 (E=0.0) | structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor (1041 aa)    
Predicted Functional Partners:
Bra013162
AT2G06210 (E=3e-294) ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding (1051 aa)
     
  0.984
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
     
  0.984
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
     
  0.981
Bra038761
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1126 aa)
     
  0.981
Bra022279
AT3G23780 (E=0.0) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1169 aa)
     
  0.981
Bra021293
AT3G23780 (E=9e-028) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase (133 aa)
     
  0.981
Bra020911
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1195 aa)
     
  0.981
Bra020873
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1304 aa)
     
  0.981
Bra013550
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1189 aa)
     
  0.981
Bra012547
AT2G24650 (E=3e-043) | DNA binding / transcription factor (328 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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