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Bra000652 protein (Brassica rapa) - STRING interaction network
"Bra000652" - AT4G08670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000652AT4G08670 (E=2e-052) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (183 aa)    
Predicted Functional Partners:
Bra036679
AT2G20400 (E=1e-072) | myb family transcription factor (329 aa)
           
  0.541
Bra036469
AT2G20400 (E=5e-066) | myb family transcription factor (348 aa)
           
  0.541
Bra039990
AT2G29640 (E=6e-073) JOSL | JOSL (JOSEPHIN-LIKE PROTEIN) (178 aa)
           
  0.540
Bra026494
AT5G23530 (E=2e-152) AtCXE18 | AtCXE18 (Arabidopsis thaliana carboxyesterase 18); carboxylesterase (335 aa)
           
  0.505
Bra009691
AT5G23530 (E=2e-162) AtCXE18 | AtCXE18 (Arabidopsis thaliana carboxyesterase 18); carboxylesterase (335 aa)
           
  0.505
Bra031513
AT1G60420 (E=2e-278) | DC1 domain-containing protein (578 aa)
           
  0.499
Bra038213
AT3G19510 (E=5e-214) HAT3.1 | HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor (709 aa)
           
  0.479
Bra022429
AT3G19510 (E=3e-189) HAT3.1 | HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor (737 aa)
           
  0.479
Bra035547
AT5G55020 (E=1e-071) ATMYB120, MYB120 | MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor (542 aa)
           
  0.412
Bra028997
AT5G55020 (E=1e-071) ATMYB120, MYB120 | MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor (553 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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