STRINGSTRING
Bra000654 protein (Brassica rapa) - STRING interaction network
"Bra000654" - AT4G08685 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000654AT4G08685 (E=1e-080) SAH7 | SAH7 (159 aa)    
Predicted Functional Partners:
Bra016867
AT2G42570 (E=3e-200) | unknown protein (392 aa)
     
   
  0.442
Bra004708
AT2G42570 (E=1e-192) | unknown protein (367 aa)
     
   
  0.442
Bra034311
AT2G26730 (E=1e-288) | leucine-rich repeat transmembrane protein kinase, putative (657 aa)
     
   
  0.440
Bra012045
AT2G26730 (E=5e-176) | leucine-rich repeat transmembrane protein kinase, putative (631 aa)
     
   
  0.440
Bra006774
AT5G58300 (E=5e-175) | leucine-rich repeat transmembrane protein kinase, putative (650 aa)
     
   
  0.440
Bra027005
AT1G63000 (E=2e-164) NRS/ER, UER1 | NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase (297 aa)
           
  0.426
Bra019776
AT1G63000 (E=4e-162) NRS/ER, UER1 | NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase (321 aa)
           
  0.426
Bra007184
AT3G55700 (E=9e-205) | UDP-glucoronosyl/UDP-glucosyl transferase family protein (449 aa)
           
  0.406
Bra003220
AT3G55700 (E=5e-199) | UDP-glucoronosyl/UDP-glucosyl transferase family protein (673 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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