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Bra000655 protein (Brassica rapa) - STRING interaction network
"Bra000655" - AT4G08690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra000655AT4G08690 (E=1e-150) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (309 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
   
  0.564
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
   
  0.564
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
   
  0.564
Bra038841
AT1G30690 (E=9e-013) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (73 aa)
       
 
  0.514
Bra033601
AT4G39180 (E=1e-025) SEC14, ATSEC14 | SEC14; phosphatidylinositol transporter (166 aa)
       
 
  0.514
Bra031200
AT2G21540 (E=5e-013) ATSFH3, SFH3 | SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (58 aa)
       
 
  0.514
Bra031198
AT2G21540 (E=2e-023) ATSFH3, SFH3 | SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (93 aa)
       
 
  0.514
Bra029635
AT1G72160 (E=3e-024) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (247 aa)
       
 
  0.514
Bra028944
AT5G56160 (E=3e-091) | transporter (696 aa)
       
 
  0.514
Bra015089
AT3G24840 (E=1e-110) | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (535 aa)
       
 
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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