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Bra000659 protein (Brassica rapa) - STRING interaction network
"Bra000659" - AT4G08900 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000659AT4G08900 (E=4e-178) | arginase (341 aa)    
Predicted Functional Partners:
Bra017672
AT4G34710 (E=0.0) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (688 aa)
     
  0.984
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
       
  0.974
Bra025033
AT5G46180 (E=8e-249) DELTA-OAT | delta-OAT; ornithine-oxo-acid transaminase (477 aa)
   
  0.972
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
         
  0.964
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
         
  0.961
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
         
  0.961
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
         
  0.961
Bra009004
AT5G10920 (E=1e-258) | argininosuccinate lyase, putative / arginosuccinase, putative (940 aa)
         
  0.943
Bra003758
AT1G75330 (E=2e-183) OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase (377 aa)
     
  0.939
Bra017182
AT2G37500 (E=3e-233) | arginine biosynthesis protein ArgJ family ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate (469 aa)
         
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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