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Bra000666 protein (Brassica rapa) - STRING interaction network
"Bra000666" - AT5G40080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000666AT5G40080 (E=5e-041) | 60S ribosomal protein-related (90 aa)    
Predicted Functional Partners:
Bra031595
AT1G07830 (E=1e-061) | ribosomal protein L29 family protein (146 aa)
     
  0.972
Bra018681
AT1G07830 (E=5e-065) | ribosomal protein L29 family protein (144 aa)
     
  0.972
Bra025534
AT5G40950 (E=4e-103) RPL27 | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome (198 aa)
     
    0.966
Bra023512
AT5G15220 (E=2e-069) | ribosomal protein L27 family protein (156 aa)
     
    0.966
Bra008711
AT5G15250 (E=4e-298) FTSH6, ATFTSH6 | FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding (1229 aa)
     
    0.966
Bra006290
AT5G15220 (E=5e-072) | ribosomal protein L27 family protein (155 aa)
     
    0.966
Bra027013
AT1G62850 (E=4e-110) | translation release factor (233 aa)
     
    0.965
Bra017876
AT4G39880 (E=4e-072) | ribosomal protein L23 family protein (176 aa)
     
  0.964
Bra011825
AT4G39880 (E=3e-073) | ribosomal protein L23 family protein (179 aa)
     
  0.964
Bra039289
AT1G14620 (E=7e-121) DECOY | DECOY (DECOY) (236 aa)
     
    0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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