STRINGSTRING
Bra000674 protein (Brassica rapa) - STRING interaction network
"Bra000674" - AT4G09140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000674AT4G09140 (E=0.0) ATMLH1, MLH1 | MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging (749 aa)    
Predicted Functional Partners:
Bra001709
AT3G18524 (E=0.0) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding ; Component of the post-replicative DNA mismatch repair system (MMR) (937 aa)
 
  0.994
Bra028327
AT3G18524 (E=1e-049) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding (165 aa)
 
  0.993
Bra028373
AT3G24495 (E=0.0) MSH7, MSH6-2, ATMSH7 | MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding (1109 aa)
 
  0.992
Bra000896
AT4G02070 (E=0.0) MSH6, MSH6-1, ATMSH6 | MSH6 (MUTS HOMOLOG 6); damaged DNA binding ; Component of the post-replicative DNA mismatch repair system (MMR) (1337 aa)
 
  0.992
Bra021052
AT4G17380 (E=0.0) MSH4, ATMSH4 | MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding (792 aa)
 
  0.991
Bra018549
AT4G02460 (E=0.0) PMS1 | PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (1123 aa)
     
0.991
Bra019156
AT4G25540 (E=0.0) MSH3, ATMSH3 | MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding ; Component of the post-replicative DNA mismatch repair system (MMR) (1084 aa)
 
  0.990
Bra035777
AT3G20475 (E=2e-284) ATMSH5, MSH5 | MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding (845 aa)
 
  0.989
Bra015033
AT3G24320 (E=0.0) MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease (1122 aa)
   
  0.986
Bra030153
AT1G29630 (E=0.0) | DNA binding / catalytic/ nuclease (693 aa)
   
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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