STRINGSTRING
Bra000675 protein (Brassica rapa) - STRING interaction network
"Bra000675" - AT4G09160 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra000675AT4G09160 (E=3e-167) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (310 aa)    
Predicted Functional Partners:
Bra024627
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (872 aa)
       
  0.678
Bra012393
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (874 aa)
       
  0.678
Bra039949
AT3G22410 (E=2e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro-IPR011074); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species- Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source- NCBI BLink). (401 aa)
       
 
  0.514
Bra035864
AT5G63060 (E=2e-062) | transporter (254 aa)
       
 
  0.514
Bra032465
AT3G22410 (E=5e-116) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro-IPR011074); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species- Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source- NCBI BLink). (416 aa)
       
 
  0.514
Bra031370
AT1G22180 (E=1e-142) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (322 aa)
       
 
  0.514
Bra026803
AT1G14820 (E=1e-110) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (254 aa)
       
 
  0.514
Bra026802
AT1G14820 (E=4e-068) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (207 aa)
       
 
  0.514
Bra026185
AT1G14820 (E=9e-106) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (245 aa)
       
 
  0.514
Bra023828
AT3G22410 (E=2e-157) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro-IPR011074); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species- Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source- NCBI BLink). (405 aa)
       
 
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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