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Bra000681 protein (Brassica rapa) - STRING interaction network
"Bra000681" - AT4G09510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000681AT4G09510 (E=5e-289) CINV2 | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (527 aa)    
Predicted Functional Partners:
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
       
      0.613
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
       
      0.613
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
       
      0.613
Bra023033
AT2G35840 (E=2e-221) | sucrose-phosphatase 1 (SPP1) (424 aa)
   
   
  0.534
Bra029805
AT3G09920 (E=0.0) PIP5K9 | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase (817 aa)
       
 
  0.533
Bra017287
AT2G35840 (E=7e-230) | sucrose-phosphatase 1 (SPP1) (422 aa)
   
   
  0.532
Bra007756
AT2G26420 (E=0.0) PIP5K3 | PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3); 1-phosphatidylinositol-4-phosphate 5-kinase (1255 aa)
       
 
  0.527
Bra040043
AT3G07960 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (713 aa)
       
 
  0.520
Bra027121
AT1G60890 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (779 aa)
       
 
  0.520
Bra019892
AT1G10900 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (759 aa)
       
 
  0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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