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Bra000684 protein (Brassica rapa) - STRING interaction network
"Bra000684" - AT4G09570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000684AT4G09570 (E=4e-271) CPK4, ATCPK4 | CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinase (500 aa)    
Predicted Functional Partners:
Bra018800
AT1G49720 (E=4e-065) ABF1 | ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (368 aa)
       
 
  0.937
Bra029160
AT5G51760 (E=2e-176) AHG1 | AHG1 (ABA-hypersensitive germination 1); catalytic/ protein serine/threonine phosphatase (418 aa)
     
 
  0.912
Bra017251
AT2G36270 (E=3e-070) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (396 aa)
       
 
  0.889
Bra005287
AT2G36270 (E=5e-133) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (438 aa)
       
 
  0.889
Bra031070
AT1G19230 (E=0.0) | respiratory burst oxidase protein E (RbohE) / NADPH oxidase (960 aa)
         
  0.886
Bra025721
AT1G19230 (E=2e-299) | respiratory burst oxidase protein E (RbohE) / NADPH oxidase (1035 aa)
         
  0.886
Bra028438
AT5G39670 (E=9e-081) | calcium-binding EF hand family protein (196 aa)
     
  0.868
Bra000985
AT3G01830 (E=1e-041) | calmodulin-related protein, putative (141 aa)
     
  0.868
Bra039037
AT3G29000 (E=9e-041) | calcium-binding EF hand family protein (105 aa)
       
  0.864
Bra036140
AT5G49480 (E=2e-064) ATCP1 | ATCP1 (Ca2+-binding protein 1); calcium ion binding (160 aa)
       
  0.864
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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