STRINGSTRING
Bra000693 protein (Brassica rapa) - STRING interaction network
"Bra000693" - AT4G09810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000693AT4G09810 (E=3e-155) | transporter-related (334 aa)    
Predicted Functional Partners:
Bra020498
AT5G25400 (E=1e-172) | phosphate translocator-related (346 aa)
           
  0.495
Bra009838
AT5G25400 (E=7e-180) | phosphate translocator-related (346 aa)
           
  0.495
Bra008981
AT5G25400 (E=3e-166) | phosphate translocator-related (350 aa)
           
  0.495
Bra007795
AT2G25520 (E=4e-170) | phosphate translocator-related (349 aa)
           
  0.495
Bra012237
AT1G76340 (E=3e-142) | integral membrane family protein (346 aa)
     
   
  0.482
Bra031568
AT1G07290 (E=2e-157) | nucleotide-sugar transmembrane transporter (362 aa)
           
  0.473
Bra027909
AT2G13650 (E=7e-163) GONST1 | GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter (329 aa)
           
  0.473
Bra020078
AT5G19980 (E=2e-086) | integral membrane family protein (305 aa)
           
  0.473
Bra015761
AT1G76340 (E=2e-107) | integral membrane family protein (271 aa)
           
  0.473
Bra015571
AT1G07290 (E=3e-175) | nucleotide-sugar transmembrane transporter (378 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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