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Bra000700 protein (Brassica rapa) - STRING interaction network
"Bra000700" - AT4G10050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000700AT4G10050 (E=2e-164) | hydrolase, alpha/beta fold family protein ; Demethylates proteins that have been reversibly carboxymethylated (345 aa)    
Predicted Functional Partners:
Bra038340
AT1G68890 (E=0.0) | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding (1710 aa)
   
 
  0.969
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
         
  0.956
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
         
  0.956
Bra031712
AT1G10430 (E=8e-172) PP2A-2 | PP2A-2; protein serine/threonine phosphatase (306 aa)
     
 
  0.938
Bra027833
AT1G59830 (E=9e-181) PP2A-1 | PP2A-1; protein serine/threonine phosphatase (306 aa)
     
 
  0.938
Bra019934
AT1G10430 (E=2e-180) PP2A-2 | PP2A-2; protein serine/threonine phosphatase (306 aa)
     
 
  0.938
Bra017398
AT1G10430 (E=2e-038) PP2A-2 | PP2A-2; protein serine/threonine phosphatase (132 aa)
     
 
  0.938
Bra016870
AT2G42500 (E=6e-186) PP2A-4 | PP2A-4; hydrolase/ protein serine/threonine phosphatase (313 aa)
     
 
  0.938
Bra016247
AT1G69960 (E=9e-179) PP2A | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A); protein serine/threonine phosphatase (306 aa)
     
 
  0.938
Bra007398
AT3G58500 (E=3e-188) PP2A-3, EP7 | PP2A-3 (PROTEIN PHOSPHATASE 2A-3); protein serine/threonine phosphatase (313 aa)
     
 
  0.938
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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