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Bra000702 protein (Brassica rapa) - STRING interaction network
"Bra000702" - AT4G10180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000702AT4G10180 (E=3e-269) DET1, FUS2, ATDET1 | DET1 (DE-ETIOLATED 1); catalytic (537 aa)    
Predicted Functional Partners:
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
     
  0.982
Bra029577
AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (1086 aa)
       
 
  0.947
Bra020355
AT5G58760 (E=7e-244) DDB2 | DDB2 (damaged DNA-binding 2); nucleic acid binding / nucleotide binding / zinc ion binding (547 aa)
         
  0.945
Bra008976
AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)
       
 
  0.943
Bra020884
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (1282 aa)
       
 
  0.939
Bra025491
AT5G41560 (E=2e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin ligase, Det1/DDB1-complexing (InterPro-IPR018276); Has 59 Blast hits to 59 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (99 aa)
       
      0.904
Bra025031
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (760 aa)
       
  0.881
Bra022023
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (785 aa)
       
  0.881
Bra017569
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (786 aa)
       
  0.881
Bra020111
AT5G20570 (E=1e-061) ROC1, RBX1, HRT1, ATRBX1 | RBX1 (RING-BOX 1); protein binding (119 aa)
       
  0.869
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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