STRINGSTRING
Bra000706 protein (Brassica rapa) - STRING interaction network
"Bra000706" - AT4G10300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
Bra000706AT4G10300 (E=1e-053) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Cupin, RmlC-type (InterPro-IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro-IPR008579), RmlC-like jelly roll fold (InterPro-IPR014710); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species- Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source- NCBI BLink). (104 aa)    
Predicted Functional Partners:
Bra000060
AT2G38400 (E=4e-257) AGT3 | AGT3 (ALANINE-GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase (476 aa)
         
  0.436
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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