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Bra000708 protein (Brassica rapa) - STRING interaction network
"Bra000708" - AT4G10340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000708AT4G10340 (E=1e-133) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (280 aa)    
Predicted Functional Partners:
Bra041107
ATCG00580 (E=3e-042) PSBE | PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized. ; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It [...] (83 aa)
       
 
  0.912
Bra018144
AT3G47470 (E=2e-131) LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (252 aa)
     
   
0.764
Bra031427
AT1G61520 (E=1e-138) LHCA3 | LHCA3; chlorophyll binding (273 aa)
     
   
0.753
Bra027083
AT1G61520 (E=5e-132) LHCA3 | LHCA3; chlorophyll binding (271 aa)
     
   
0.752
Bra003198
AT3G54890 (E=5e-135) LHCA1 | LHCA1; chlorophyll binding (241 aa)
     
   
0.746
Bra007109
AT3G54890 (E=1e-133) LHCA1 | LHCA1; chlorophyll binding (241 aa)
     
   
0.746
Bra031624
AT1G08380 (E=4e-072) PSAO | PSAO (photosystem I subunit O) (145 aa)
     
   
  0.731
Bra018629
AT1G08380 (E=7e-067) PSAO | PSAO (photosystem I subunit O) (145 aa)
     
   
  0.731
Bra038584
AT1G61520 (E=1e-114) LHCA3 | LHCA3; chlorophyll binding (287 aa)
     
   
0.724
Bra010774
AT1G30380 (E=2e-057) PSAK | PSAK (photosystem I subunit K) (130 aa)
     
   
  0.721
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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