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Bra000717 protein (Brassica rapa) - STRING interaction network
"Bra000717" - AT4G10640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000717AT4G10640 (E=8e-144) IQD16 | IQD16 (IQ-domain 16); calmodulin binding (432 aa)    
Predicted Functional Partners:
Bra017409
AT2G02790 (E=2e-187) IQD29 | IQD29 (IQ-domain 29); calmodulin binding (565 aa)
           
  0.541
Bra035527
AT5G35670 (E=5e-125) iqd33 | iqd33 (IQ-domain 33); calmodulin binding (400 aa)
           
  0.518
Bra013672
AT4G23060 (E=1e-131) IQD22 | IQD22 (IQ-domain 22); calmodulin binding (496 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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