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Bra000719 protein (Brassica rapa) - STRING interaction network
"Bra000719" - AT4G10710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000719AT4G10710 (E=0.0) SPT16 | SPT16 (global transcription factor C) (1168 aa)    
Predicted Functional Partners:
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
  0.999
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
  0.999
Bra031459
AT1G61040 (E=1e-243) VIP5 | VIP5 (vernalization independence 5); DNA binding (630 aa)
     
  0.984
Bra013162
AT2G06210 (E=3e-294) ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding (1051 aa)
     
  0.984
Bra009582
AT1G79730 (E=7e-208) ELF7 | ELF7 (EARLY FLOWERING 7) (576 aa)
     
  0.984
Bra035940
AT5G61150 (E=4e-166) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (622 aa)
     
  0.976
Bra029332
AT5G61150 (E=6e-163) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (626 aa)
     
  0.976
Bra040834
AT3G22590 (E=1e-202) | RNA pol II accessory factor Cdc73 family protein (411 aa)
     
  0.975
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
  0.962
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
  0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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