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Bra000721 protein (Brassica rapa) - STRING interaction network
"Bra000721" - AT4G10790 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000721AT4G10790 (E=7e-155) | UBX domain-containing protein (479 aa)    
Predicted Functional Partners:
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.974
Bra029485
AT4G04180 (E=1e-285) | AAA-type ATPase family protein (585 aa)
     
  0.974
Bra034089
AT3G09840 (E=0.0) CDC48, ATCDC48, CDC48A | CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (810 aa)
     
  0.972
Bra029941
AT4G04180 (E=7e-029) | AAA-type ATPase family protein (205 aa)
     
  0.972
Bra029795
AT3G09840 (E=0.0) CDC48, ATCDC48, CDC48A | CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (809 aa)
     
  0.972
Bra025123
AT2G03667 (E=2e-284) | asparagine synthase (glutamine-hydrolyzing) (713 aa)
     
  0.972
Bra017378
AT2G03670 (E=6e-277) CDC48B | CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (603 aa)
     
  0.972
Bra006978
AT3G53230 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative (811 aa)
     
  0.972
Bra005733
AT5G03340 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative (1104 aa)
     
  0.972
Bra003123
AT3G53230 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative (810 aa)
     
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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