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Bra000728 protein (Brassica rapa) - STRING interaction network
"Bra000728" - AT4G10920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000728AT4G10920 (E=3e-056) KELP | KELP; DNA binding / transcription coactivator/ transcription regulator (163 aa)    
Predicted Functional Partners:
Bra032834
AT1G27595 (E=0.0) | EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (TAIR-AT5G01400.1); Has 529 Blast hits to 235 proteins in 85 species- Archae - 0; Bacteria - 3; Metazoa - 125; Fungi - 41; Plants - 31; Viruses - 0; Other Eukaryotes - 329 (source- NCBI BLink). (1346 aa)
       
 
  0.931
Bra028900
AT5G01400 (E=0.0) ESP4 | ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (1515 aa)
       
 
  0.931
Bra010931
AT1G27595 (E=0.0) | EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (TAIR-AT5G01400.1); Has 529 Blast hits to 235 proteins in 85 species- Archae - 0; Bacteria - 3; Metazoa - 125; Fungi - 41; Plants - 31; Viruses - 0; Other Eukaryotes - 329 (source- NCBI BLink). (1321 aa)
       
 
  0.931
Bra017971
AT3G49601 (E=1e-071) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species- Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source- NCBI BLink). (586 aa)
       
      0.894
Bra037858
AT4G08350 (E=6e-030) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (83 aa)
       
 
  0.751
Bra037857
AT4G08350 (E=3e-062) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (251 aa)
       
 
  0.751
Bra022968
AT4G08350 (E=0.0) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (1020 aa)
       
 
  0.751
Bra009470
AT5G04290 (E=0.0) KTF1 | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding (1543 aa)
       
 
  0.751
Bra000641
AT2G34210 (E=0.0) | structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor (1041 aa)
       
 
  0.751
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
       
 
  0.627
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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