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Bra000733 protein (Brassica rapa) - STRING interaction network
"Bra000733" - AT4G14180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000733AT4G14180 (E=1e-272) AtPRD1 | AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1); protein binding / protein homodimerization (1205 aa)    
Predicted Functional Partners:
Bra039374
AT3G13170 (E=1e-182) ATSPO11-1 | ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic (362 aa)
       
 
  0.947
Bra027674
AT1G63990 (E=5e-187) SPO11-2 | SPO11-2 (SPORULATION 11-2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic (380 aa)
       
 
  0.777
TOP6A
AT5G02820 (E=1e-213) RHL2, BIN5 | RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding ; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity (429 aa)
       
 
  0.722
Bra020406
AT5G57880 (E=6e-118) | unknown protein (362 aa)
           
  0.541
Bra002687
AT5G57880 (E=1e-101) | unknown protein (411 aa)
           
  0.541
Bra033241
AT1G01690 (E=6e-107) | unknown protein (399 aa)
     
   
  0.484
Bra004222
AT1G67370 (E=4e-265) ASY1, ATASY1 | ASY1 (ASYNAPTIC 1); DNA binding (599 aa)
           
  0.477
Bra026191
AT1G14750 (E=1e-213) SDS | SDS (SOLO DANCERS); cyclin-dependent protein kinase (528 aa)
           
  0.412
Bra023796
AT3G22880 (E=6e-171) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (332 aa)
           
  0.408
Bra003000
AT5G54260 (E=0.0) MRE11, ATMRE11 | MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase (709 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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