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Bra000738 protein (Brassica rapa) - STRING interaction network
"Bra000738" - AT4G11160 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000738AT4G11160 (E=0.0) | translation initiation factor IF-2, mitochondrial, putative (1025 aa)    
Predicted Functional Partners:
Bra040979
AT4G11175 (E=2e-011) | translation initiation factor IF-1, chloroplast, putative (82 aa)
     
  0.947
Bra035390
AT2G04520 (E=2e-062) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
     
  0.947
Bra035247
AT4G11175 (E=1e-068) | translation initiation factor IF-1, chloroplast, putative (141 aa)
     
  0.947
Bra018827
AT2G04520 (E=6e-029) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative (103 aa)
     
  0.947
Bra015153
AT2G04520 (E=2e-061) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
     
  0.947
Bra013204
AT2G04520 (E=1e-066) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
     
  0.947
Bra005423
AT2G34420 (E=8e-101) LHB1B2, LHCB1.5 | LHB1B2; chlorophyll binding (496 aa)
     
  0.947
Bra005422
AT5G35680 (E=2e-046) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (148 aa)
     
  0.947
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.942
Bra032124
AT2G24060 (E=3e-106) | translation initiation factor 3 (IF-3) family protein ; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (295 aa)
   
  0.935
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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