STRINGSTRING
Bra000742 protein (Brassica rapa) - STRING interaction network
"Bra000742" - AT4G11360 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000742AT4G11360 (E=1e-058) RHA1B | RHA1B; protein binding / zinc ion binding (308 aa)    
Predicted Functional Partners:
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
  0.983
Bra036232
AT4G05230 (E=3e-060) | ubiquitin family protein (201 aa)
       
  0.982
Bra036231
AT4G05230 (E=1e-013) | ubiquitin family protein (444 aa)
       
  0.982
Bra036230
AT4G03370 (E=5e-016) | ubiquitin family protein (538 aa)
       
  0.982
Bra034606
AT4G05230 (E=7e-079) | ubiquitin family protein (208 aa)
       
  0.982
Bra029570.1-P
AT4G02890 (E=7e-082) UBQ14 | UBQ14; protein binding ; Ubiquitin- exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-48- [...] (153 aa)
       
  0.982
Bra029569
AT4G05230 (E=8e-081) | ubiquitin family protein (206 aa)
       
  0.982
Bra009542
AT5G03240 (E=6e-126) UBQ3 | UBQ3 (POLYUBIQUITIN 3); protein binding (230 aa)
       
  0.982
Bra005585
AT2G32350 (E=3e-124) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein modification process; LOCATED IN- cellular_component unknown; EXPRESSED IN- flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Ubiquitin (InterPro-IPR000626); BEST Arabidopsis thaliana protein match is- ubiquitin family protein (TAIR-AT4G05230.1); Has 132 Blast hits to 112 proteins in 46 species- Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 1; Plants - 50; Viruses - 12; Other Eukaryotes - 35 (source- NCBI BLink). (242 aa)
       
  0.982
Bra000852
AT4G05230 (E=7e-017) | ubiquitin family protein (83 aa)
       
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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