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Bra000755 protein (Brassica rapa) - STRING interaction network
"Bra000755" - AT4G11910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000755AT4G11910 (E=5e-129) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; BEST Arabidopsis thaliana protein match is- NYE1 (NON-YELLOWING 1) (TAIR-AT4G22920.1); Has 130 Blast hits to 128 proteins in 45 species- Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (274 aa)    
Predicted Functional Partners:
Bra034882
AT4G13250 (E=1e-247) | short-chain dehydrogenase/reductase (SDR) family protein (497 aa)
     
 
  0.572
Bra032697
AT4G13250 (E=2e-133) | short-chain dehydrogenase/reductase (SDR) family protein (529 aa)
     
 
  0.572
Bra037607
AT3G44880 (E=5e-276) ACD1, LLS1, PAO | ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase (536 aa)
     
 
  0.566
Bra023436
AT5G13800 (E=1e-236) | hydrolase, alpha/beta fold family protein (484 aa)
     
 
  0.524
Bra006215
AT5G13800 (E=2e-227) | hydrolase, alpha/beta fold family protein (488 aa)
     
 
  0.524
Bra011734
AT4G37000 (E=6e-135) ACD2, ATRCCR | ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase (490 aa)
       
 
  0.479
Bra006210
AT5G13700 (E=9e-237) ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine oxidase (471 aa)
       
 
  0.478
Bra015335
AT1G04620 (E=8e-252) | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (464 aa)
       
 
  0.432
Bra025756
AT1G19670 (E=1e-163) ATCLH1, CORI1, ATHCOR1 | ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1); chlorophyllase (324 aa)
           
  0.418
Bra036000
AT5G43860 (E=2e-154) ATCLH2, CLH2 | ATCLH2; chlorophyllase (321 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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