STRINGSTRING
Bra000756 protein (Brassica rapa) - STRING interaction network
"Bra000756" - AT4G11920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000756AT4G11920 (E=2e-212) CCS52A2, FZR1 | CCS52A2; signal transducer (470 aa)    
Predicted Functional Partners:
Bra039034
AT2G20000 (E=0.0) HBT, CDC27b | HBT (HOBBIT); binding (743 aa)
     
  0.994
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
  0.994
Bra013534
AT4G21530 (E=0.0) | nucleotide binding (773 aa)
     
  0.994
Bra015512
AT1G06590 (E=0.0) | unknown protein (914 aa)
     
  0.993
Bra018081
AT3G48150 (E=0.0) APC8, CDC23 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding (579 aa)
     
  0.993
Bra005857
AT5G05560 (E=0.0) EMB2771 | EMB2771 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase (1767 aa)
     
  0.993
Bra005063
AT2G39090 (E=1e-259) | tetratricopeptide repeat (TPR)-containing protein (558 aa)
     
  0.993
Bra035062
AT1G78770 (E=2e-291) APC6 | cell division cycle family protein (544 aa)
     
  0.990
Bra028905
AT2G04660 (E=0.0) APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase (856 aa)
     
    0.989
Bra007362
AT3G57860 (E=7e-079) UVI4-LIKE | UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) (247 aa)
       
 
  0.987
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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