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Bra000766 protein (Brassica rapa) - STRING interaction network
"Bra000766" - AT4G12230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra000766AT4G12230 (E=6e-194) | esterase/lipase/thioesterase family protein (390 aa)    
Predicted Functional Partners:
Bra039974
AT2G30670 (E=1e-112) | tropinone reductase, putative / tropine dehydrogenase, putative (263 aa)
           
  0.607
Bra039969
AT2G30670 (E=7e-115) | tropinone reductase, putative / tropine dehydrogenase, putative (263 aa)
           
  0.607
Bra001785
AT3G20360 (E=8e-133) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein (282 aa)
           
  0.607
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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