STRINGSTRING
Bra000779 protein (Brassica rapa) - STRING interaction network
"Bra000779" - AT4G12570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000779AT4G12570 (E=3e-274) UPL5 | UPL5 (UBIQUITIN PROTEIN LIGASE 5); acid-amino acid ligase/ binding / ubiquitin-protein ligase (713 aa)    
Predicted Functional Partners:
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
     
  0.994
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
  0.974
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
     
  0.970
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
     
  0.970
Bra006947
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.970
Bra012402
AT5G24240 (E=9e-242) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (1162 aa)
     
  0.970
Bra009742
AT5G24240 (E=1e-274) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.970
Bra006947.1-P
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.970
Bra024598
AT1G23410 (E=2e-021) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (210 aa)
       
  0.964
Bra016346
AT1G23410 (E=6e-029) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (84 aa)
       
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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