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Bra000791 protein (Brassica rapa) - STRING interaction network
"Bra000791" - AT4G04350 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000791AT4G04350 (E=0.0) EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (956 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.982
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.982
Bra021036
AT2G32270 (E=4e-030) ZIP3 | ZIP3; zinc ion transmembrane transporter (474 aa)
   
  0.956
Bra037950
AT3G62120 (E=2e-010) | tRNA synthetase class II (G, H, P and S) family protein (120 aa)
   
  0.956
Bra037949
AT3G62120 (E=1e-019) | tRNA synthetase class II (G, H, P and S) family protein (147 aa)
   
  0.956
Bra029197
AT5G10880 (E=3e-070) | tRNA synthetase-related / tRNA ligase-related (218 aa)
   
  0.956
Bra028313
AT5G52520 (E=5e-098) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (408 aa)
   
  0.956
Bra028248
AT5G52520 (E=4e-090) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (538 aa)
   
  0.956
Bra022597
AT5G52520 (E=1e-290) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (542 aa)
   
  0.956
Bra017510
AT5G10880 (E=4e-050) | tRNA synthetase-related / tRNA ligase-related (145 aa)
   
  0.956
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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