STRINGSTRING
Bra000792 protein (Brassica rapa) - STRING interaction network
"Bra000792" - AT4G04360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000792AT4G04360 (E=1e-063) | unknown protein (175 aa)    
Predicted Functional Partners:
Bra038690
AT3G11964 (E=0.0) | RNA binding (1948 aa)
     
  0.996
Bra034795
AT3G11964 (E=0.0) | RNA binding (1930 aa)
     
  0.996
Bra010564
AT1G63810 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 268 Blast hits to 263 proteins in 124 species- Archae - 3; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 17; Viruses - 0; Other Eukaryotes - 43 (source- NCBI BLink). (1048 aa)
     
  0.995
Bra029585
AT3G06530 (E=0.0) | binding (2208 aa)
     
  0.992
Bra001203
AT3G06530 (E=0.0) | binding (2402 aa)
     
  0.992
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
  0.991
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
  0.991
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
     
  0.991
Bra038327
AT1G69070 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPro-IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species- Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source- NCBI BLink). (904 aa)
     
  0.986
Bra018437
AT1G10490 (E=0.0) | unknown protein (1024 aa)
     
 
  0.985
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]