STRINGSTRING
Bra000795 protein (Brassica rapa) - STRING interaction network
"Bra000795" - AT4G04480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000795AT4G04480 (E=5e-153) | LOCATED IN- chloroplast; EXPRESSED IN- flower, pollen tube; EXPRESSED DURING- petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT4G22030.1); Has 51 Blast hits to 51 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (397 aa)    
Predicted Functional Partners:
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
       
      0.755
Bra029532
AT4G04950 (E=5e-091) | thioredoxin family protein (339 aa)
       
      0.618
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]