STRINGSTRING
Bra000801 protein (Brassica rapa) - STRING interaction network
"Bra000801" - AT1G03660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000801AT1G03660 (E=2e-024) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is- ankyrin repeat family protein (TAIR-AT1G03670.1); Has 53 Blast hits to 53 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (146 aa)    
Predicted Functional Partners:
Bra033543
AT3G22980 (E=8e-238) | elongation factor Tu family protein (910 aa)
           
  0.549
Bra008585
AT5G16880 (E=2e-188) | VHS domain-containing protein / GAT domain-containing protein (409 aa)
           
  0.548
Bra006377
AT5G16880 (E=1e-185) | VHS domain-containing protein / GAT domain-containing protein (406 aa)
           
  0.548
Bra030137
AT1G35220 (E=0.0) | unknown protein (1000 aa)
           
  0.545
Bra029715
AT3G08760 (E=3e-232) ATSIK | ATSIK; ATP binding / kinase/ protein kinase/ protein tyrosine kinase (562 aa)
           
  0.543
Bra001200
AT3G06480 (E=0.0) | DEAD box RNA helicase, putative (1052 aa)
           
  0.543
Bra040058
AT3G08760 (E=5e-207) ATSIK | ATSIK; ATP binding / kinase/ protein kinase/ protein tyrosine kinase (536 aa)
           
  0.512
Bra020281
AT5G59845 (E=6e-035) | gibberellin-regulated family protein (87 aa)
           
  0.483
Bra019917
AT2G39540 (E=2e-030) | gibberellin-regulated family protein (66 aa)
           
  0.483
Bra008664
AT5G15890 (E=8e-195) | unknown protein (450 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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