STRINGSTRING
Bra000803 protein (Brassica rapa) - STRING interaction network
"Bra000803" - AT4G04670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000803AT4G04670 (E=0.0) | Met-10+ like family protein / kelch repeat-containing protein (987 aa)    
Predicted Functional Partners:
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.943
Bra031378
AT1G22270 (E=2e-040) | unknown protein (127 aa)
     
 
  0.943
Bra012318
AT1G22270 (E=2e-049) | unknown protein (125 aa)
     
 
  0.943
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.943
Bra011947
AT2G28450 (E=0.0) | zinc finger (CCCH-type) family protein (785 aa)
     
   
  0.729
Bra015860
AT1G75200 (E=4e-310) | flavodoxin family protein / radical SAM domain-containing protein (644 aa)
     
   
  0.714
Bra003764
AT1G75200 (E=5e-301) | flavodoxin family protein / radical SAM domain-containing protein (649 aa)
     
   
  0.714
Bra039402
AT3G13440 (E=3e-116) | methyltransferase/ nucleic acid binding (310 aa)
       
 
  0.651
Bra039401
AT3G13440 (E=5e-062) | methyltransferase/ nucleic acid binding (128 aa)
       
 
  0.651
Bra027435
AT3G13440 (E=1e-107) | methyltransferase/ nucleic acid binding (249 aa)
       
 
  0.651
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]