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Bra000808 protein (Brassica rapa) - STRING interaction network
"Bra000808" - AT4G04910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000808AT4G04910 (E=0.0) NSF | NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding (714 aa)    
Predicted Functional Partners:
Bra014705
AT3G56190 (E=7e-140) ALPHA-SNAP2, ASNAP | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein (292 aa)
     
  0.980
Bra007224
AT3G56190 (E=1e-138) ALPHA-SNAP2, ASNAP | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein (289 aa)
     
  0.980
Bra003231
AT3G56190 (E=3e-140) ALPHA-SNAP2, ASNAP | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein (289 aa)
     
  0.980
Bra024484
AT2G17980 (E=8e-162) ATSLY1 | ATSLY1; protein transporter (637 aa)
     
  0.979
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
  0.979
Bra032934
AT2G17980 (E=1e-027) ATSLY1 | ATSLY1; protein transporter (311 aa)
     
  0.976
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
  0.968
Bra024165
AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (323 aa)
   
0.940
Bra010342
AT4G29040 (E=3e-224) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (445 aa)
   
0.938
Bra011079
AT4G29040 (E=3e-227) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (443 aa)
   
0.938
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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