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Bra000810 protein (Brassica rapa) - STRING interaction network
"Bra000810" - AT4G04950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000810AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)    
Predicted Functional Partners:
Bra019100
AT4G26550 (E=3e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source- NCBI BLink). (452 aa)
   
 
  0.992
Bra026428
AT4G26500 (E=4e-093) EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator (349 aa)
   
 
  0.989
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
   
  0.986
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
   
  0.986
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
  0.982
Bra006413
AT5G17560 (E=4e-065) | BolA-like family protein (181 aa)
   
 
  0.979
Bra013968
AT5G17560 (E=8e-067) | BolA-like family protein (177 aa)
   
 
  0.978
Bra037789
AT5G09830 (E=6e-037) | BolA-like family protein (98 aa)
   
 
  0.975
Bra009080
AT5G09830 (E=1e-029) | BolA-like family protein (92 aa)
   
 
  0.975
Bra030833
AT1G55805 (E=3e-049) | BolA-like family protein (158 aa)
   
 
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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