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Bra000818 protein (Brassica rapa) - STRING interaction network
"Bra000818" - AT1G30300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000818AT1G30300 (E=5e-121) | unknown protein (319 aa)    
Predicted Functional Partners:
Bra018434
AT1G10520 (E=3e-240) | DNA polymerase lambda (POLL) (524 aa)
       
      0.895
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
              0.537
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
              0.537
Bra028573
AT5G10720 (E=0.0) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (911 aa)
         
  0.482
Bra009011
AT5G10720 (E=2e-250) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (898 aa)
         
  0.482
Bra006075
AT5G10720 (E=7e-264) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (934 aa)
         
  0.482
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
         
  0.467
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
         
  0.467
Bra040850
AT5G39830 (E=4e-217) DEGP8, DEG8 | DEG8; peptidase/ serine-type peptidase (451 aa)
         
  0.459
Bra036752
AT3G16550 (E=1e-141) DEGP12 | DEGP12 (DEGP PROTEASE 12); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (517 aa)
         
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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