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Bra000824 protein (Brassica rapa) - STRING interaction network
"Bra000824" - AT4G03430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000824AT4G03430 (E=1e-194) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (574 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.995
Bra037770
AT5G64270 (E=0.0) | splicing factor, putative (1268 aa)
     
  0.984
Bra024281
AT5G64270 (E=0.0) | splicing factor, putative (1245 aa)
     
  0.984
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
     
  0.982
Bra008595
AT5G16780 (E=2e-269) DOT2, MDF | DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2) (812 aa)
     
  0.981
Bra031522
AT1G60170 (E=4e-222) emb1220 | emb1220 (embryo defective 1220) (486 aa)
     
  0.980
Bra026149
AT1G60170 (E=3e-156) emb1220 | emb1220 (embryo defective 1220) (484 aa)
     
  0.980
Bra033025
AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase (1094 aa)
     
  0.979
Bra029333
AT5G61140 (E=0.0) | DEAD box RNA helicase, putative (2133 aa)
     
  0.979
Bra029460
AT1G80070 (E=2e-013) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (87 aa)
     
  0.979
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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