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Bra000838 protein (Brassica rapa) - STRING interaction network
"Bra000838" - AT4G03260 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000838AT4G03260 (E=1e-163) | leucine-rich repeat family protein (454 aa)    
Predicted Functional Partners:
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
  0.953
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
  0.953
Bra000153
AT2G39840 (E=1e-185) TOPP4 | TOPP4; protein serine/threonine phosphatase (490 aa)
       
 
  0.945
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
     
  0.942
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
     
  0.942
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
       
  0.928
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
       
  0.889
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.842
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
  0.821
Bra034332
AT2G27210 (E=0.0) BSL3 | kelch repeat-containing serine/threonine phosphoesterase family protein (998 aa)
     
 
  0.787
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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