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Bra000839 protein (Brassica rapa) - STRING interaction network
"Bra000839" - AT4G03240 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000839AT4G03240 (E=2e-051) ATFH, FH | FH (FRATAXIN HOMOLOG) (161 aa)    
Predicted Functional Partners:
Bra037826
AT5G65720 (E=6e-222) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (457 aa)
       
  0.981
Bra020855
AT4G22220 (E=1e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (164 aa)
       
  0.980
Bra013601
AT4G22220 (E=8e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (159 aa)
       
  0.980
Bra024414
AT5G65720 (E=3e-018) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (155 aa)
       
  0.978
Bra029483
AT4G04080 (E=3e-050) ISU3, ATISU3 | ISU3 (ISCU-LIKE 3); structural molecule (115 aa)
       
  0.977
Bra009876
AT5G26030 (E=2e-221) FC1, FC-I, ATFC-I | FC1 (ferrochelatase 1); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (459 aa)
       
  0.944
Bra007748
AT2G30390 (E=2e-216) FC2, FC-II, ATFC-II | FC2 (FERROCHELATASE 2); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (495 aa)
       
  0.944
Bra029325
AT5G61220 (E=5e-037) | complex 1 family protein / LVR family protein (87 aa)
     
  0.901
Bra016168
AT5G61220 (E=6e-024) | complex 1 family protein / LVR family protein (187 aa)
     
  0.901
Bra012977
AT5G61220 (E=2e-034) | complex 1 family protein / LVR family protein (87 aa)
     
  0.901
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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