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Bra000849 protein (Brassica rapa) - STRING interaction network
"Bra000849" - AT4G03020 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000849AT4G03020 (E=3e-261) | transducin family protein / WD-40 repeat family protein (490 aa)    
Predicted Functional Partners:
Bra025031
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (760 aa)
     
 
  0.743
Bra022023
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (785 aa)
     
 
  0.743
Bra017569
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (786 aa)
     
 
  0.743
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
       
      0.737
Bra000529
AT2G26990 (E=2e-233) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (439 aa)
       
      0.737
Bra026439
AT4G26430 (E=4e-152) CSN6B | CSN6B (318 aa)
       
      0.621
Bra023453
AT5G14250 (E=1e-180) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (425 aa)
       
      0.621
Bra019106
AT4G26430 (E=7e-152) CSN6B | CSN6B (318 aa)
       
      0.621
Bra006326
AT5G14250 (E=3e-081) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (250 aa)
       
      0.621
Bra006246
AT5G14250 (E=2e-184) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (421 aa)
       
      0.621
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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