STRINGSTRING
Bra000850 protein (Brassica rapa) - STRING interaction network
"Bra000850" - AT4G02980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000850AT4G02980 (E=1e-099) ABP1, ABP | ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1); auxin binding (198 aa)    
Predicted Functional Partners:
Bra004149
AT1G66150 (E=0.0) TMK1 | TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase (943 aa)
       
 
  0.728
Bra026271
AT4G28270 (E=2e-086) | zinc finger (C3HC4-type RING finger) family protein (195 aa)
       
 
  0.644
Bra024213
AT4G28270 (E=6e-083) | zinc finger (C3HC4-type RING finger) family protein (196 aa)
       
 
  0.644
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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