STRINGSTRING
Bra000852 protein (Brassica rapa) - STRING interaction network
"Bra000852" - AT4G05230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000852AT4G05230 (E=7e-017) | ubiquitin family protein (83 aa)    
Predicted Functional Partners:
Bra039258
AT1G75220 (E=8e-016) | integral membrane protein, putative (123 aa)
     
  0.997
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
       
  0.996
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
       
  0.996
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
       
  0.996
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.995
Bra006768
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2093 aa)
     
  0.995
Bra002652
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2113 aa)
     
  0.995
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
     
  0.994
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
  0.994
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
     
  0.994
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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