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Bra000853 protein (Brassica rapa) - STRING interaction network
"Bra000853" - AT4G02930 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000853AT4G02930 (E=1e-222) | elongation factor Tu, putative / EF-Tu, putative ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (453 aa)    
Predicted Functional Partners:
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.989
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
   
  0.977
Bra035251
AT4G11120 (E=4e-197) | translation elongation factor Ts (EF-Ts), putative ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (395 aa)
   
  0.973
Bra000734
AT4G11120 (E=8e-114) | translation elongation factor Ts (EF-Ts), putative ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (372 aa)
   
  0.973
Bra008512
AT1G64880 (E=3e-213) | ribosomal protein S5 family protein (500 aa)
   
  0.973
Bra021918
AT2G34520 (E=1e-048) RPS14 | RPS14 (mitochondrial ribosomal protein S14); structural constituent of ribosome (151 aa)
   
  0.967
Bra005418
AT2G34520 (E=2e-049) RPS14 | RPS14 (mitochondrial ribosomal protein S14); structural constituent of ribosome (154 aa)
   
  0.967
Bra035439
AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome (280 aa)
   
  0.966
Bra027857
AT1G58380 (E=1e-015) XW6 | XW6; structural constituent of ribosome (64 aa)
   
  0.966
Bra021879
AT2G33800 (E=5e-078) | ribosomal protein S5 family protein (302 aa)
   
  0.966
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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