STRINGSTRING
Bra000857 protein (Brassica rapa) - STRING interaction network
"Bra000857" - AT4G02880 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000857AT4G02880 (E=8e-140) | unknown protein (442 aa)    
Predicted Functional Partners:
Bra011119
AT4G29520 (E=6e-111) | LOCATED IN- endoplasmic reticulum, plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Saposin B (InterPro-IPR008139); Has 120 Blast hits to 120 proteins in 43 species- Archae - 2; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 47 (source- NCBI BLink). (310 aa)
           
  0.452
Bra016401
AT1G21900 (E=4e-064) | emp24/gp25L/p24 family protein (242 aa)
           
  0.449
Bra005002
AT2G39920 (E=5e-104) | acid phosphatase class B family protein (251 aa)
           
  0.414
Bra010324
AT4G29520 (E=8e-108) | LOCATED IN- endoplasmic reticulum, plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Saposin B (InterPro-IPR008139); Has 120 Blast hits to 120 proteins in 43 species- Archae - 2; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 47 (source- NCBI BLink). (305 aa)
           
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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