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Bra000858 protein (Brassica rapa) - STRING interaction network
"Bra000858" - AT4G02850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000858AT4G02850 (E=2e-116) | phenazine biosynthesis PhzC/PhzF family protein (298 aa)    
Predicted Functional Partners:
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
       
      0.620
Bra012616
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
       
      0.620
Bra017545
AT4G18100 (E=4e-070) | 60S ribosomal protein L32 (RPL32A) (133 aa)
       
      0.620
Bra013284.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
       
      0.620
Bra012616.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
       
      0.620
Bra039017
AT4G29390 (E=2e-015) | 40S ribosomal protein S30 (RPS30B) (97 aa)
       
      0.613
Bra036708
AT1G51820 (E=1e-018) | leucine-rich repeat protein kinase, putative (143 aa)
       
      0.613
Bra035628
AT4G29390 (E=3e-024) | 40S ribosomal protein S30 (RPS30B) (62 aa)
       
      0.613
Bra001911
AT3G23390 (E=5e-047) | 60S ribosomal protein L36a/L44 (RPL36aA) (105 aa)
       
      0.613
Bra031096
AT4G29390 (E=5e-021) | 40S ribosomal protein S30 (RPS30B) (80 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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