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Bra000860 protein (Brassica rapa) - STRING interaction network
"Bra000860" - AT4G02840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000860AT4G02840 (E=1e-050) | small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (115 aa)    
Predicted Functional Partners:
Bra010295
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
     
  0.998
Bra010295.1-P
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (88 aa)
     
  0.998
Bra024458
AT2G18740 (E=2e-043) | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (86 aa)
     
  0.998
Bra002044
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
     
  0.997
Bra032135
AT3G11500 (E=8e-040) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (80 aa)
     
  0.997
Bra002044.1-P
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
     
  0.997
Bra038817
AT2G18770 (E=7e-116) | signal recognition particle binding (323 aa)
     
  0.996
Bra024094
AT4G30220 (E=4e-041) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (90 aa)
     
  0.996
Bra025830
AT1G20580 (E=7e-056) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (130 aa)
     
0.993
Bra034834.1-P
AT3G11500 (E=8e-040) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
     
  0.993
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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