STRINGSTRING
Bra000862 protein (Brassica rapa) - STRING interaction network
"Bra000862" - AT4G02800 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000862AT4G02800 (E=4e-115) | unknown protein (328 aa)    
Predicted Functional Partners:
Bra030733
AT1G08560 (E=9e-128) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (304 aa)
     
        0.546
Bra018615
AT1G08560 (E=7e-130) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (307 aa)
     
        0.546
Bra038063
AT4G15830 (E=6e-124) | binding (292 aa)
     
        0.426
Bra035256
AT4G23800 (E=2e-069) | high mobility group (HMG1/2) family protein (433 aa)
     
        0.407
Bra013731
AT4G23800 (E=3e-149) | high mobility group (HMG1/2) family protein (460 aa)
     
        0.407
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]