STRINGSTRING
Bra000865 protein (Brassica rapa) - STRING interaction network
"Bra000865" - AT4G02740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000865AT4G02740 (E=5e-124) | CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G02760.2); Has 1691 Blast hits to 1200 proteins in 170 species- Archae - 2; Bacteria - 109; Metazoa - 687; Fungi - 197; Plants - 199; Viruses - 23; Other Eukaryotes - 474 (source- NCBI BLink). (503 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
 
    0.921
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
 
    0.921
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
 
    0.921
Bra028876
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1967 aa)
     
 
    0.915
Bra009598
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1985 aa)
     
 
    0.915
Bra005717
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1849 aa)
     
 
    0.915
Bra039504
AT1G10230 (E=1e-046) ASK18 | ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase (169 aa)
       
  0.825
Bra025795
AT1G20140 (E=7e-072) ASK4 | ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase (161 aa)
       
  0.825
Bra018757
AT1G75950 (E=5e-056) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
       
  0.825
Bra018756
AT1G75950 (E=5e-045) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (156 aa)
       
  0.825
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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